A tool for analyzing evolutionary trees of reconciled genes and single gene

Jaehee Jung, Gangman Yi

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

To analyze genomic evolution based on next generation sequencing (NGS) sequencing, it is necessary to construct phylogenetic trees for single genes or for reconciled organisms using various genes. Phylogenetic trees that are constructed using the neighbor-joining or the UPGMA methods are mostly used to analyze the evolution of genes following the assembly of new genomes, and determine whether the predicted genes have evolutionary status similar to those of the model organisms. Thus, this study aimed to automatically extract genes common to the newly assembled sequences of interests and those of reference species, and show both evolutionary trees for each single gene as well as that of organisms with reconciled individual genes, thus aiding evolutionary analysis.

Original languageEnglish
Title of host publicationProceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
EditorsHarald Schmidt, David Griol, Haiying Wang, Jan Baumbach, Huiru Zheng, Zoraida Callejas, Xiaohua Hu, Julie Dickerson, Le Zhang
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages2762-2763
Number of pages2
ISBN (Electronic)9781538654880
DOIs
StatePublished - 21 Jan 2019
Event2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018 - Madrid, Spain
Duration: 3 Dec 20186 Dec 2018

Publication series

NameProceedings - 2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018

Conference

Conference2018 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2018
Country/TerritorySpain
CityMadrid
Period3/12/186/12/18

Keywords

  • evolutionary tree
  • phylogenetic tree
  • single gene

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