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Artificial intelligence for natural product drug discovery

  • Michael W. Mullowney
  • , Katherine R. Duncan
  • , Somayah S. Elsayed
  • , Neha Garg
  • , Justin J.J. van der Hooft
  • , Nathaniel I. Martin
  • , David Meijer
  • , Barbara R. Terlouw
  • , Friederike Biermann
  • , Kai Blin
  • , Janani Durairaj
  • , Marina Gorostiola González
  • , Eric J.N. Helfrich
  • , Florian Huber
  • , Stefan Leopold-Messer
  • , Kohulan Rajan
  • , Tristan de Rond
  • , Jeffrey A. van Santen
  • , Maria Sorokina
  • , Marcy J. Balunas
  • Mehdi A. Beniddir, Doris A. van Bergeijk, Laura M. Carroll, Chase M. Clark, Djork Arné Clevert, Chris A. Dejong, Chao Du, Scarlet Ferrinho, Francesca Grisoni, Albert Hofstetter, Willem Jespers, Olga V. Kalinina, Satria A. Kautsar, Hyunwoo Kim, Tiago F. Leao, Joleen Masschelein, Evan R. Rees, Raphael Reher, Daniel Reker, Philippe Schwaller, Marwin Segler, Michael A. Skinnider, Allison S. Walker, Egon L. Willighagen, Barbara Zdrazil, Nadine Ziemert, Rebecca J.M. Goss, Pierre Guyomard, Andrea Volkamer, William H. Gerwick, Hyun Uk Kim, Rolf Müller, Gilles P. van Wezel, Gerard J.P. van Westen, Anna K.H. Hirsch, Roger G. Linington, Serina L. Robinson, Marnix H. Medema
  • The University of Chicago
  • University of Strathclyde
  • Leiden University
  • Georgia Institute of Technology
  • Wageningen University & Research
  • University of Johannesburg
  • Goethe University Frankfurt
  • LOEWE Center for Translational Biodiversity Genomics (TBG)
  • Technical University of Denmark
  • University of Basel
  • Oncode Institute
  • Hochschule Düsseldorf
  • Eidgenössische Technische Hochschule (ETH) Zürich
  • Friedrich Schiller University Jena
  • The University of Auckland
  • Simon Fraser University
  • Bayer AG
  • University of Michigan, Ann Arbor
  • Université Paris-Saclay
  • European Molecular Biology Laboratory
  • University of Wisconsin-Madison
  • Pfizer Pharma GmbH
  • Adapsyn Bioscience
  • University of St Andrews
  • Eindhoven University of Technology
  • Utrecht University
  • Helmholtz Centre for Infection Research
  • Saarland University
  • Scripps Research
  • Universidade de São Paulo
  • KU Leuven
  • University of Marburg
  • Martin Luther University Halle-Wittenberg
  • Duke University
  • Swiss Federal Institute of Technology Lausanne
  • Microsoft USA
  • University of British Columbia
  • Vanderbilt University
  • Maastricht University
  • University of Tübingen
  • Université de Lille
  • Charité – Universitätsmedizin Berlin
  • University of California at San Diego
  • Korea Advanced Institute of Science and Technology
  • Helmholtz International Lab for Anti-Infectives
  • Royal Netherlands Academy of Arts and Sciences
  • Swiss Federal Institute of Aquatic Science and Technology

Research output: Contribution to journalReview articlepeer-review

313 Scopus citations

Abstract

Developments in computational omics technologies have provided new means to access the hidden diversity of natural products, unearthing new potential for drug discovery. In parallel, artificial intelligence approaches such as machine learning have led to exciting developments in the computational drug design field, facilitating biological activity prediction and de novo drug design for molecular targets of interest. Here, we describe current and future synergies between these developments to effectively identify drug candidates from the plethora of molecules produced by nature. We also discuss how to address key challenges in realizing the potential of these synergies, such as the need for high-quality datasets to train deep learning algorithms and appropriate strategies for algorithm validation.

Original languageEnglish
Pages (from-to)895-916
Number of pages22
JournalNature Reviews Drug Discovery
Volume22
Issue number11
DOIs
StatePublished - Nov 2023

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