Draft genome sequence of Tianweitania sediminis isolated from the subsurface sediment core

Geeta Chhetri; Inhyup Kim; Jiyoun Kim; Minchung Kang; Yoonseop So; Taegun Seo

doi:10.7845/kjm.2021.1036

Draft genome sequence of Tianweitania sediminis isolated from the subsurface sediment core

Geeta Chhetri
, Inhyup Kim
, Jiyoun Kim
, Minchung Kang
, Yoonseop So
, Taegun Seo

Department of Life Science

Dongguk University

Research output: Contribution to journal › Article › peer-review

Abstract

Here, we report the first draft genome sequence of the member of the genus Tianweitania, which was isolated from sediment core in north-east China. The whole-genome sequence was analyzed in this study using Illumina Hiseq platform. The genome comprises 22 contigs with genome size of 4,704,309 bp long. The G + C content was 61.8%. The draft genome contains 4,476 protein-coding genes, 57 pseudogenes and 60 RNA genes including 6 ribosomal RNA genes, 50 transfer RNA (tRNA) genes and 4 non-coding RNA (ncRNA) genes. Siderophore biosynthesis genes and tryptophan biosynthesis genes were identified. These indicates that Tianweitania sediminis Z8^T possesses potential plant growth-promoting activity.

Original language	English
Pages (from-to)	232-234
Number of pages	3
Journal	Korean Journal of Microbiology
Volume	57
Issue number	3
DOIs	https://doi.org/10.7845/kjm.2021.1036
State	Published - 2021

Keywords

draft genome sequence
indole-acetic acid
Phyllobacterium
siderophore
Tianweitania sediminis Z8

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10.7845/kjm.2021.1036

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title = "Draft genome sequence of Tianweitania sediminis isolated from the subsurface sediment core",

abstract = "Here, we report the first draft genome sequence of the member of the genus Tianweitania, which was isolated from sediment core in north-east China. The whole-genome sequence was analyzed in this study using Illumina Hiseq platform. The genome comprises 22 contigs with genome size of 4,704,309 bp long. The G + C content was 61.8\%. The draft genome contains 4,476 protein-coding genes, 57 pseudogenes and 60 RNA genes including 6 ribosomal RNA genes, 50 transfer RNA (tRNA) genes and 4 non-coding RNA (ncRNA) genes. Siderophore biosynthesis genes and tryptophan biosynthesis genes were identified. These indicates that Tianweitania sediminis Z8T possesses potential plant growth-promoting activity.",

keywords = "draft genome sequence, indole-acetic acid, Phyllobacterium, siderophore, Tianweitania sediminis Z8",

author = "Geeta Chhetri and Inhyup Kim and Jiyoun Kim and Minchung Kang and Yoonseop So and Taegun Seo",

note = "Publisher Copyright: {\textcopyright} 2021. The Microbiological Society of Korea",

year = "2021",

doi = "10.7845/kjm.2021.1036",

language = "English",

volume = "57",

pages = "232--234",

journal = "Korean Journal of Microbiology",

issn = "0440-2413",

publisher = "The Korean Society for Mocrobiology / The Korean Society of Virology",

number = "3",

}

TY - JOUR

T1 - Draft genome sequence of Tianweitania sediminis isolated from the subsurface sediment core

AU - Chhetri, Geeta

AU - Kim, Inhyup

AU - Kim, Jiyoun

AU - Kang, Minchung

AU - So, Yoonseop

AU - Seo, Taegun

PY - 2021

Y1 - 2021

N2 - Here, we report the first draft genome sequence of the member of the genus Tianweitania, which was isolated from sediment core in north-east China. The whole-genome sequence was analyzed in this study using Illumina Hiseq platform. The genome comprises 22 contigs with genome size of 4,704,309 bp long. The G + C content was 61.8%. The draft genome contains 4,476 protein-coding genes, 57 pseudogenes and 60 RNA genes including 6 ribosomal RNA genes, 50 transfer RNA (tRNA) genes and 4 non-coding RNA (ncRNA) genes. Siderophore biosynthesis genes and tryptophan biosynthesis genes were identified. These indicates that Tianweitania sediminis Z8T possesses potential plant growth-promoting activity.

AB - Here, we report the first draft genome sequence of the member of the genus Tianweitania, which was isolated from sediment core in north-east China. The whole-genome sequence was analyzed in this study using Illumina Hiseq platform. The genome comprises 22 contigs with genome size of 4,704,309 bp long. The G + C content was 61.8%. The draft genome contains 4,476 protein-coding genes, 57 pseudogenes and 60 RNA genes including 6 ribosomal RNA genes, 50 transfer RNA (tRNA) genes and 4 non-coding RNA (ncRNA) genes. Siderophore biosynthesis genes and tryptophan biosynthesis genes were identified. These indicates that Tianweitania sediminis Z8T possesses potential plant growth-promoting activity.

KW - draft genome sequence

KW - indole-acetic acid

KW - Phyllobacterium

KW - siderophore

KW - Tianweitania sediminis Z8

UR - https://www.scopus.com/pages/publications/85117964621

U2 - 10.7845/kjm.2021.1036

DO - 10.7845/kjm.2021.1036

M3 - Article

AN - SCOPUS:85117964621

SN - 0440-2413

VL - 57

SP - 232

EP - 234

JO - Korean Journal of Microbiology

JF - Korean Journal of Microbiology

IS - 3

ER -

Draft genome sequence of Tianweitania sediminis isolated from the subsurface sediment core

Abstract

Keywords

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