Quadrisphaera setariae sp. nov., polyphosphate-accumulating bacterium occurring as tetrad or aggregate cocci and isolated from Setaria viridis

Inhyup Kim, Geeta Chhetri, Jiyoun Kim, Yoonseop So, Taegun Seo

Research output: Contribution to journalArticlepeer-review

9 Scopus citations

Abstract

A Gram-stain-positive, orange-pigmented, aerobic, cocci (occurring in tetrads), non-spore-forming, non-motile bacterium, designated as DD2AT, was isolated from Setaria viridis collected at Dongguk University, Republic of Korea. Phylogenetic analysis based on the 16S rRNA gene revealed that strain DD2AT was most closely related to type strains of the genus Quadrisphaera. Strain DD2AT showed the highest 16S rRNA gene sequence similarities to Quadrisphaera oryzae TBRC 8486T (99.4%) and Quadri-sphaera granulorum JCM 16010T (98.8%). Strain DD2AT also showed auto-aggregation ability. The digital DNA–DNA hybridization values between strain DD2AT and the reference strains, Q. oryzae TBRC 8486T and Q. granulorum JCM 16010T were 31.1 and 27.4%, respectively. The average nucleotide identity values between strain DD2AT and Q. oryzae TBRC 8486T and Q. granulorum JCM 16010T were 86.3 and 84.1%, respectively. The major polar lipids of strain DD2AT were diphosphatidylglycerol and phos-phatidylglycerol. The major cellular fatty acid of strain DD2AT was anteiso-C15:0 . The cell-wall peptidoglycan contained meso-diaminopimelic acid (which is a diagnostic cell-wall diamino acid), alanine and glutamic acid. The respiratory quinones was found to be menaquinone-8. The DNA G+C content of strain DD2AT was 74.8 mol%. On the basis of the findings of genotypic, phenotypic, chemotaxonomic and phylogenetic analyses, strain DD2AT was considered to represent a novel member in the genus Quadrisphaera, for which the name Quadrisphaera setariae sp. nov. is proposed. The type strain of Quadrisphaera setariae is DD2AT (=KACC 21165T=NBRC 113770T).

Original languageEnglish
Article number005465
JournalInternational Journal of Systematic and Evolutionary Microbiology
Volume72
Issue number8
DOIs
StatePublished - 2022

Keywords

  • aggregation
  • Kineosporiaceae
  • Quadrisphaera
  • Setaria

Fingerprint

Dive into the research topics of 'Quadrisphaera setariae sp. nov., polyphosphate-accumulating bacterium occurring as tetrad or aggregate cocci and isolated from Setaria viridis'. Together they form a unique fingerprint.

Cite this